Alright. It's fixed. It's one of those "I'm an idiot" moments.
Headlights: my HRK5 kit from ceautoelectricsupply.com (courtesy of tony candela, 12v electronic guru) is having an issue. I think it's the relays that come with it. I plugged the OEM harnesses back into the lights after testing all fuses and removing the fleece module, listening for the relays to click, and the lights are back on. I'm waiting to hear back from tony on that now.
The P0101 and high idle.... i should have double checked the vacuum line coming in and made sure the SBA was fully seated to the brake booster. Loose hose and unseated vacuum module = a bad day. I don't know why the loss of vacuum gave me a MAF code though. That seems odd to me.
But, problem solved, lesson learned, and I'm back to a 600-640rpm idle.
I just assumed that since the last thing I did was the positive cables to ground reset that it had to be the issue. It may be what caused Tony's relays to fail, somehow. We shall see.