Wouldn’t CMP affect all cylinders though, or at least a bank and not just 2 cylinders?
A few assorted quotes from me unanswered-
"so the next steps are to eliminate possibilities one by one starting with the most obvious or the easiest diagnostic. I think verify that misfires are ONLY on #5 ."
" as well as CMP being one of the most misdiagnosed as something else problems."
"Dist cap/rotor, Ign module, coil, Crank sensor are all Delco Delphi only or problems follow."
"Minimum tool list- scanner, fuel pressure guage, spark tester. Total under $100."
"First suspect on misfire is dist cap on these"
"Live data on scanner while driving is a big help also"
"Good dignostics here-"
Live Data- not stored codes- monitor ALL cylinders for misfire, along with as many other items you can fit or watch. Missfire codes are set after a specific number and circumstances, a guess is somewhere in 150-300 range
I think change hold down is 1st step repair. Don't overthink it.You stated it is -10 deg NOT "0"
Was the injection updated/replaced when intake gaskets changed?
Manifold vac appears to be reasonably good, I don't know how you tested or if you monitered missfires at various steady RPMs, so 1st guess is intake gaskets ok.
A 6 foot hose on fuel pressure guage allows you to watch fuel pressure while driving.
Have you read the troubleshooting section of manual for misfires?