I would pull the control out so it is loose out of the dash, put some sort of padding under it, then go hit some bumps on purpose and see if it still occurs, if not you may have loose solder or something to that effect in the controller, if the problem still occurs then you know it's less likely to be the control and maybe a bad wire connection down by the pump.
one other thing to question on this, is does the control cut out completely? or does the fan/blower just cut off that could be a separate issue as well
or does the cold air stop being cold and just blows hot.
more detailed info will be needed to figure this out