they vent air (and thus pressure) from the cabin, so things like A/C can work, and the doors can be closed with the windows up.
easy way: Crack a window. turn the box around?
Dynamat Extreme is mostly mass loading. additional mass drops the resonant frequency. IN addition elastomerics convert sound energy to heat, and the aluminum back providse rigidity.
When you say THEY are rattling, do you mean the caps themselves are resonating, merely flexing or that the TRUCK BODY and they are rubbing against each other?
If they are flexing you can put a little dynamat extreme in them, but otherwise I would wonder if hey didn't have some broken tabs or some other mounting problem. I really donlt see you making them flex.