Just my humble opinion......
1. The Chilton’s manual says to remove the fuel injectors, fuel rails, and TB from the intake manifold before removing the manifold. It then says they are usually removed together as one unit but taking them off separately helps prevent damage to the injectors when the manifold is removed. So, you guys that have done this, what is the best way? Take them off separate or as one unit?
>>Leave the TB and injectors attached to the intake, That way you only need the fuel line tool and not worry about the TB gasket or injector o-rings. NOTE: the cable for the cruise control will be a pain to remove as you have to press a tab with a screwdiver and turn the star wheel if I recall correctly, and one of the TB coolant clamps will be a pain.
2. If I do remove the fuel rails and injectors from the intake manifold won’t I need new o-rings for the injectors?
>> Possibly.....you may tear one taking the injector out. It is way easier to just leave the injectors and fuel rail intact and attached to the manifold
3. If I take them off as a full assembly I’ll still need the fuel line disconnect tool, right?
>> Yes. make sure you relieve the fuel pressure first by pressing on the schrader valve, and catch the gas that comes out with a rag.
4. In the torque specs it says Step one, 44 in-lbs. Step two, 89 in-lbs. The instructions don’t list a step one and two. Could this mean I tighten them once to 44 then go back over them again tightening them to 89?
>> I used the "snug is good enough" method since I don't have an inch pound torque wrench. I ran all the screws down by hand to where they stopped, then in the criss cross method, snugged them down
5. It says to chase the threads in the bolt holes before reassembling. Is this necessary?
>> I didn't do it. If the bolts come out nice and smooth, then I wouldn't worry about it
You don't need any adhesive, the gaskets have locating tabs and the gasket itself is an o-ring