Most engines are tuned to run richer during the break-in period. This helps seat the rings and keep excess heat at bay. Once that period is over (usually buried deep in the ECM with certain criteria that needs to be met), it will then run on your normally scheduled programming.
Another thing to consider is that there are multiple mechanical systems that are ALL breaking-in at the same time. The machining of new parts is quite phenomenal, but there is always the final in-use period where everything learns to play nice together. I'd give it a couple thousand miles and then see where you're at.
As stated by others: winter fuel and shorter trips don't help either.