I'm not ruling them out, but the problems other than the lifter and/or push rod failures don't smell like engineering fails to me. They smell like budget cuts: Lower quality materials and workmanship on the electronics, trim pieces, etc. The slip-ups in the installations and assembly are concurrent with over-worked and maybe even underpaid employees being rushed to put quantity over quality.
I my mind, the engineers are saying "We can't do xxxx because it has a 30% chance of failing" while the bean counters are saying "If we rush out an extra 500,000 units a year, that 30% will affect an even smaller number of units in comparison".
...With the millions of leak-free LS engines pounding the highways since '98, I'd have to trust them on their crank seal design.