What were you expecting? >kidding!< Haha
Seriously though... I'd be surprised if your lights were "back in sync" with any kind of permanence. What I mean is, I don't think they "reset" until the next time that you apply the brakes -- I just think that each time the brakes are pressed when the blinker is already on, it'll start the sequence over starting with the blinker light coming on.
So, if your blinker is something like this:
On....On....On...On...
Then applying the brake might do this:
On...On/On...On...On...
I don't think it STAYS in that pattern... I think that when the brake is stabbed, the light flashes, no matter where in the pattern the flasher was, and then flashes in time from there.
I don't think there's any correcting it. And if you're so OCD that you TRY to keep it in sync by timing your braking, well, you should see someone about that. LOL
Again, I don't know that the oem ones don't respond the same exact way. They may. They may not. BUT, I'm pretty sure they blink WITH the mirror's signal, and not opposite. (Could be wrong about that one, too.)
Remember, there are three possible scenarios:
1. The tail, mirror, and in-dash flasher all blink together.
2. The tail and flasher blink together while the mirror is opposite.
3. The tail and mirror blink together while the flasher is opposite.
To be sure what's going on, I'd back up toward a wall at night and see what's going on once and for all.