I really hope you mean .0042", as in a hair over four thousandths! The stock head gasket is about .052" compressed, so .042" means you'd have about .010" quench. Never mind PTV clearance! You need around .037" minimum quench for safety. If that wasn't a typo, then you're looking at needing around a .079" thick gasket!
Confirm the piston height at TDC. Also, did all the pistons measure the same?
All my previous ramblings are in reference to stock dimensions. Still, .010" quench is too tight for anything, if your .042" is accurate. Because of the pistons you have, I'd ask TSP what they'd recommend for gasket thickness. They're gonna need to know what heads you have and their specs (casting, chamber volume, any shaving, etc.), your cam specs, your intended CR and quench preferences (I'd aim for as close to .037" as reasonably possible). Ideally, you can satisfy all with a stock gasket as it'd be the cheapest. I think Fel-Pro offers thinner MLS gaskets for not so much more cost as stock gaskets. I wish I had known this when I ordered my Cometics.