The end of the story goes like this. The 3-4 clutch was pretty well gone, most of the seals were completely worn out. The relatively new fluid had definitely taken on some material from within the trans. Took it to a shop where they went through the whole thing and rebuilt with new clutches, steels and new seals.
Had it back about two weeks now and it shifts like never before. With the BB tune and Corvette servo it barks the MTs into 2nd and 3rd. I stay out of it most of the time because the trans seems more aggressive that a plain OEM rebuild.